Williams Lab # |
Name |
Sequence |
USE |
Species |
Product Size cDNA (bp) |
Product Size genomic (bp) |
Desciption |
38 |
HhaIF |
GCGCATAAATTCATCAGC |
Diagnostic |
B. malayi |
|
|
Forward PCR primer for Hha I repeat. Used in conjhunction with Hha I R to get a 322 bp PCR product |
39 |
HhaIR |
GCGCAAAACTTAATTACAAAAGC |
Diagnostic |
B. malayi |
|
|
Reverse PCR primer for amplification of the Hha I repeat of B.malayi. Used in conjunction with HhaI F to get a 322 bp product |
40 |
NV-1 |
CGTGATGGCATCAAAGTAGCG |
Diagnostic |
W. bancrofti |
|
188 |
Forward PCR primer for Ssp I repeat sequence from W. bancrofti |
41 |
NV-2 |
CCCTCACTTACCATAAGACAAC |
Diagnostic |
W. bancrofti |
|
188 |
Reverse PCR primer for Ssp I repeat sequence from W. bancrofti |
49 |
BmMf-481F1 |
GATGGTATTTTGGGTATG |
|
B. malayi |
|
|
Forward PCR primer for BmMf-481 Cathespin D homolog |
50 |
BmMf-481R1 |
CCATACCCAAAATACCATC |
|
B. malayi |
|
|
Reverse PCR primer for BmMf-481 Cathespin D homolog |
89 |
SL-1 |
GGTTTAATTACCCAAGTTTGAG |
|
C.elegans |
|
|
Spliced leader 1 primer from C. elegans |
91 |
SL-2 |
GGTTTTAACCCAGTTACTCAAG |
|
C.elegans |
|
|
Spliced leader 2 primer from C. elegans |
97 |
SX-1 (OVECSOD) |
TGGCAATGGAGCTAGAAGAGCAG |
gene expression |
O.volvulus |
218 |
|
Forward PCR primer for Ov Extracellular superoxide dismutase |
98 |
SX-2 (OvEcSODrev) |
TCTGTCATTTGGACCACCATGAG |
gene expression |
O.volvulus |
218 |
|
Reverse PCR primer for Ov Extra-cellular superoxide dismutase |
183 |
Ms86U |
TTTTTGTTTTCAACAGCATT |
Diagnostic |
M. streptocerca |
|
200 |
Forward primer for internal nested PCR, for use with primers 1087/1088 |
184 |
Ms265L |
AGTTCCCATCAATTGTCC |
Diagnostic |
M. streptocerca |
|
200 |
Reverse primer for internal nested PCR, for use with primers 1087/1088 |
185 |
Mp1158U |
ATTTTCAACAGCATCAGTAAC |
Diagnostic |
M. perstans |
|
|
Forward primer for Mansonella perstans |
186 |
Mp334L |
GTCGTAGACAAGATAAACCAA |
Diagnostic |
M. perstans |
|
|
Reverse primer for Mansonella perstans |
199 |
CUT3-R |
AGTGCTATTGCCATTCC |
|
O.volvulus |
|
|
Reverse PCR primer for Ov cuticlin gene 3. |
200 |
CUT3-F |
ATCGTCGTATCATTTCATTC |
|
O.volvulus |
|
|
Forward PCR primer for Ov cuticlin gene 3. |
233 |
Ov-1548U |
TGGAACACCAGGACCCAT |
|
O.volvulus |
|
|
Upper primer for OV Collagen |
234 |
Ov-1548L |
GGCCAGGTAAGGTGGAAA |
|
O.volvulus |
|
|
Ov3M 1548 lower primer--amplifies OV Collagen |
249 |
Ov3M-944U |
TGGAATCATTGCCATGCAGA |
|
O.volvulus |
|
|
Upper primer for OV Collagen |
250 |
Ov3M-944L |
GGTTCACCAGGTGGTCCGTC |
|
O.volvulus |
|
|
Lower primer for OV Collagen |
255 |
Ov3M-1702U |
AATTATGATGGCTGGTCTG |
|
O.volvulus |
|
|
Upper primer for cytochrome oxidase |
256 |
Ov3M-1702L |
TGATCAACCCTTCCAACACT |
|
O.volvulus |
|
|
Lower primer for cytochrome oxidase |
257 |
OVL3-1034U |
TGAGCAAACCGAAGATTGGA |
|
O.volvulus |
|
|
Upper primer for Oncho glyceraldehyde 3-phosphate dehydrogenase |
258 |
OVL3-1034L |
GCAGATGGAGCCGAAATGAT |
|
O.volvulus |
|
|
Lower primer for Oncho glyceraldehyde-3-phosphate dehydrogenase |
260 |
MBAFCW7E12U |
AGGATTTGAAGTGCGAGAT |
|
R. prowazekii |
|
|
Upper primer for RNA polymerase beta subunit of Rickettsia prowazekii. |
261 |
MBAFCW7E12L |
GCCCTATTAGCATCATCATT |
|
R. prowazekii |
|
|
Lower primer for RNA polymerase beta subunit of Rickettsia prowazekii. |
262 |
MBAFCF3H02L |
ACACGGGATAACACAGCAT |
|
R. prowazekii |
|
|
Upper primer for a putative Fl-ATP synthase beta subunit. |
263 |
MBAFCF3H02U |
CCAATAGGTAGAGGGCAAAG |
|
R. prowazekii |
|
|
Lower primer for a putative Fl-ATP synthase beta subunit. |
308 |
Cecut2-For |
ATGCAGAAGCTCATCGTTTTC |
gene study |
C. elegans |
649 |
|
Forward PCR primer for C. elegans cut-2 gene |
309 |
Cecut2-Rev |
CTAGTTCTTCTTGTGTCCAGC |
gene study |
C. elegans |
649 |
|
Reverse PCR primer for C. elegans cut-2 gene |
346 |
NDK-F |
CGAACAACGAGGATACAAATTG |
gene study |
B. malayi |
135 |
|
Forward PCR primer for nucleoside diphosphate kinase from B. malayi |
347 |
NDK-R |
GAAGGCAAGGAATCTGAACC |
gene study |
B. malayi |
135 |
|
Reverse PCR primer for nucleoside diphosphate kinase from B. malayi |
356 |
Bmtpx2.F1 |
CTAATTGGCATCCAGGATC |
gene study |
B. malayi |
113 |
|
Forward PCR primer for B malayi thioredoxin peroxidase 2 |
357 |
Bmtpx2.R1 |
CCACTGAGTAATTCCATGTCG |
gene study |
B. malayi |
113 |
|
Reverse PCR primer for B malayi thioredoxin peroxidase 2 |
383 |
Ovcut1-1fullfor |
GCTGCTGTATGCCCTTGT |
|
O.volvulus |
|
|
Forward PCR primer for the very beginning of the Ov cut1-1 cDNA for full length PCR |
384 |
Ovcut1-1fullrev |
TAGAATCTCAGAACCGGTAACA |
|
O.volvulus |
|
|
Reverse PCR primer for the very end of the Ov cut1-1 cDNA for full length PCR (with Ov cut1-1fullfor) |
385 |
Ovcut1-2fullfor. |
CTGTTATTATCAATATCGTTATTT |
|
O.volvulus |
|
|
Forward PCR primer for the very beginning of the Ov cut1-2 cDNA for full length PCR (along with Ov cut1-2full rev) |
386 |
Ovcut1-2fullrev |
CTGAGATTGACTGGAAGAT |
|
O.volvulus |
|
|
Reverse PCR primer for the very end of the Ov cut1-2 cDNA for full length PCR (with Ovcut1-2fullfor) |
387 |
Ovcut1-3fullfor |
CAATAGTCGCTTCTAAAA |
|
O.volvulus |
|
|
Forward PCR primer for the very beginning of the Ov cut1-3 cDNA for full length gene PCR (with Ovcut1-3fullrev) |
388 |
Ovcut1-3fullrev |
CACCTGATTCTTTATTATTAT |
|
O.volvulus |
|
|
Reverse PCR primer for the very end of the Ov cut1-3 cDNA for full length gene PCR (with Ovcut1-3fullfor) |
401 |
Ov-Tpx2g-CF |
AGCTCCTAACTTCAAGACACC |
|
O.volvulus |
|
|
Forward primer designed to sequence of Tpx2 clone pulled out of O.volvulus genomic library made by MLW 2/00 |
402 |
Ov-Tpx2g-CR |
ACCAAGTCCACCCATTT |
|
O.volvulus |
|
|
Reverse primer designed to sequence of Tpx2 clone pulled out of O.volvulus genomic library made by MLW 2/00 |
421 |
Ov-alt.R |
GCAGGTCCAGTTTTCGTCAGGT |
|
O.volvulus |
|
|
Reverse PCR primer designed to amplify both Oncho alt-1 and alt-2 genes. |
422 |
Ov-alt.F |
ATAGTATGGGCACAAAGAAA |
|
O.volvulus |
|
|
Forward PCR primer designed to amplify both Oncho alt-1 and alt-2 genes. |
423 |
Ov-TR-F |
CCGAAGATTTACGCCAAGTCTA |
|
|
|
|
PCR Forward primer designed from three types of thioredoxin ESTs |
424 |
Ov-TR-R |
GGTAACAACAGTGCCATCAGAT |
|
|
|
|
PCR Reverse primer designed from three types of thiroedoxin ESTs |
439 |
Ov-gpd-F |
GGAAAGTTGTGGCGAGATGGTC |
|
O.volvulus |
|
|
Forward PCR primer designed to pull out the Ov-gpd operon |
440 |
Ov-gpd-R |
GTAATCGATGTTGATGAAGGGGTCA |
|
O.volvulus |
|
|
Reverse PCR primer designed to pull out the Ov-gpd operon |
441 |
Ov-pdi/cyp-F |
TTTCCCTGCCAGTTCTAATAAGGTA |
|
O.volvulus |
|
|
Forward PCR primer designed to pull out the Ov-pdi/cyp operon |
442 |
Ov-pdi/cyp-R |
GATTCTCCACCCGTTCCATC |
|
O.volvulus |
|
|
Reverse PCR primer designed to pull out the Ov-pdi/cyp operon |
443 |
Ov-rpl27/21-F |
TGCCCGACAGTAAACATTGACAAGC |
|
O.volvulus |
|
|
Forward PCR primer designed to pull out the Ov-rpl27/21 operon |
444 |
Ov-rpl27/21-R |
GCCGCATAAACACACGCCAACT |
|
O.volvulus |
|
|
Reverse PCR primer designed to pull out the Ov-rpl27/21 operon |
591 |
Ovcathepsin-1F |
CTACAGTATGACGAGTCTGC |
|
O.volvulus |
|
|
Forward PCR primer, amplifies OV cathepsin |
592 |
Ovcathepsin-1R |
TATGACGAGGCTTACGA |
|
O.volvulus |
|
|
Reverse PCR primer, amplifies OV cathepsin |
601 |
WbLDR1.F |
TGGCATCAAAGTAGCGTAA |
Diagnostic |
W. bancrofti |
|
|
Forward PCR primer for the W.bancrofti long dispersed repeat |
602 |
WbLDR1.R |
TTCTCCGTCGACTGTCTAAT |
Diagnostic |
W. bancrofti |
|
|
Reverse PCR primer for the W.bancrofti long dispersed repeat |
603 |
NV-3 |
CGTGATGGCATCAAAGTAGCGT |
Diagnostic |
W. bancrofti |
|
|
Forward primer for Wb-sspI repeat |
604 |
NV-4 |
GAATTCCCTCACTTACCATAAGACAACA |
Diagnostic |
W. bancrofti |
|
|
Reverse primer for Wb sspI repeat |
617 |
Ovcut1-2.Rev.1 |
CTGAGATTGACTGGAAGATTGAGGAAT |
|
O.volvulus |
|
|
Reverse PCR primer designed to very end (positions 1589-1615) of the cut1-2 cDNA. Long primer to be used in XL PCR to generate genomic fragment for sequencing. |
618 |
Ovcut1-2.Forw.2 |
ACAGTGAATGTGCACGACCACAATGTG |
|
O.volvulus |
|
|
Forward PCR primer designed to the middle (positions 853-880) of the cut1-2 cDNA. Long primer to be used in XL PCR to generate genomic fragment for sequencing. |
619 |
Ovcut1-2.Rev.2 |
CGGATGACCGTATTCACGATGTTCAAC |
|
O.volvulus |
|
|
Reverse PCR primer designed to the middle (positions 1078-1114) of the cut1-2 cDNA. Long primer to be used in XL PCR to generate genomic fragment for sequencing. |
626 |
OVcystatin-1F |
AATGATAATGAGGACGATGA |
|
O.volvulus |
|
|
Forward primer for Ov cystatin |
627 |
OVcystatin-1R |
CATGCCATAGTAACTTTGAA |
|
O.volvulus |
|
|
Reverse primer for Ov cystatin |
640 |
Ovcut1-2For.1b |
CAGCAACAGCAACAGGATCTATTACTGTTATTATC |
|
O.volvulus |
|
|
Forward PCR primer designed to very beginning (positions 1-26) of the cut1-2 cDNA. Long primer to be used in XL PCR to generate genomic fragment for sequencing. |
650 |
Wb-LDR.F2 |
AAGTTGTCTTCTGCTCTATGATTT |
Diagnostic |
W. bancrofti |
|
|
Forward PCR primer for Wb LDR repeat to PCR with Wb-LDR.R2 |
651 |
Wb-LDR.R2 |
GCATAAGCTCACTTACCATAAGAC |
Diagnostic |
W. bancrofti |
|
|
Reverse PCR primer for Wb LDR repeat to PCR with Wb-LDR.F2 |
652 |
Wb-LDR.F3 |
GAACTTAACTAATTGGAACAGA |
Diagnostic |
W. bancrofti |
|
|
Forward PCR primer for Wb LDR repeat to PCR with Wb-LDR.R3 (for end of repeat) |
653 |
Wb-LDR.R3 |
TATCCAAACTAATTGTAAGCAG |
Diagnostic |
W. bancrofti |
|
|
Reverse PCR primer for Wb LDR repeat to PCR with Wb-LDR.F3 (for end of repeat) |
654 |
Wb-LDR.F4 |
TGTTGGCTTGGTATAACCTTATTT |
Diagnostic |
W. bancrofti |
|
|
Forward PCR primer designed to Wb LDR repeat to PCR with Wb-LDR.R4 |
655 |
Wb-LDR.R4 |
GCATCATCATCATTTCTGTTTGA |
Diagnostic |
W. bancrofti |
|
|
Reverse PCR primer designed to Wb LDR repeat to PCR with Wb-LDR.F4 |
903 |
Ovcathepsin-F2 |
ACTGATCGTATTCGCCTTCC |
|
O.volvulus |
|
|
Forward PCR primer Ov cathespin |
904 |
Ovcathepsin-R2 |
CGTAGCTCGCCATTGTCTTC |
|
O.volvulus |
|
|
Reverse PCR primer Ov cathespin |
905 |
Ovcystatin-F2 |
CGGCAGAGAGATGTTCTACTTG |
|
O.volvulus |
|
|
Forward PCR primer Ov cathespin |
906 |
Ovcystatin-R2 |
CCGGCCACCACTTGAGT |
|
O.volvulus |
|
|
Reverse PCR primer Ov cathespin |
913 |
GS25-R |
TTGATGCACTGCCAAGGG |
|
Mosquito |
|
|
Reverse PCR primer Mosquito GS gene |
914 |
GS24-F |
AGCCATACAGCTGAGAGT |
|
Mosquito |
|
|
Forward PCR primer Mosquito GS gene |
923 |
Tpx1A-F |
GCTGGCATTCGACCTTTGG |
|
B. malayi |
|
|
Forward PCR primer for B. malayi Tpx1 |
924 |
Tpx1A-R |
CTCCTTGGACTCCTTGATGCC |
|
B. malayi |
|
|
Reverse PCR primer for B. malayi Tpx1 |
925 |
Tpx2A-F |
GCTGTTATGGCATGTTCAAC |
|
B. malayi |
|
|
Forward PCR primer for B. malayi Tpx2 |
926 |
Tpx2A-R |
ATCGTTTCAGATCCTGGATG |
|
B. malayi |
|
|
Reverse PCR primer for B. malayi Tpx2 |
973 |
Bm-serpinA-F |
TGTCCAGGTGCCTTTGAAATG |
|
B. malayi |
|
|
Forward PCR primer for B malayi serpin |
974 |
Bm-serpinA-R |
TGTCCAGGTGCCTTTGAAATG |
|
B. malayi |
|
|
Reverse PCR primer for B malayi serpin |
975 |
Bm-serpinB-F |
CAGGCGAAAAGCTACTTAAATACGT |
|
B. malayi |
|
|
Forward PCR primer for B malayi serpin |
976 |
Bm-serpinB-R |
GACGGAAAAGTACAAAGGATCATTC |
|
B. malayi |
|
|
Reverse PCR primer for B malayi serpin |
982 |
Wbtub-F |
GGTTTCGTCTCTTAATTCATTCTTCAA |
|
W. bancrofti |
|
|
Forward PCR primer for Wb Btub |
983 |
Wbtub-R |
AAGTTGTTACTCCAGACATTGTCACAG |
|
W. bancrofti |
|
|
Reverse PCR primer for Wb Btub |
995 |
Ov-cpi.F1 |
CATTATTCTCTGTCGCTCTC |
|
O.volvulus |
|
|
Forward PCR primer for Cystein Proteinase Inhibitor- OV TC2789. Designed from the consensus sequence from TIGR. |
996 |
Ov-cpi.R1 |
TTCCAGGATTTCTTCGTC |
|
O.volvulus |
|
|
Reverse PCR primer for Cystein Proteinase Inhibitor- OV TC2789. Designed from the consensus sequence from TIGR. |
1052 |
BmWb-rbp-1.F1 |
GAATTCGAAACGGAAGCAG |
|
Mosquito |
|
163 |
Forward PCR primer for mosquito RT-PCR to all stages of Wb and Bm. |
1053 |
BmWb-rbp-1.R1 |
CATTTGAAACGGGACGATTAC |
|
Mosquito |
|
163 |
Reverse PCR primer for mosquito RT-PCR to all stages of Wb and Bm. |
1054 |
BmWb-tph-1.F1 |
AAGGACGGCAAGTAGTAAGGA |
|
Mosquito |
|
142 |
Forward PCR primer for mosquito RT-PCR to all stages of Wb and Bm. |
1055 |
BmWb-tph-1.R1 |
TCTTGTAGCCGATGGTTGAG |
|
Mosquito |
|
142 |
Reverse PCR primer for mosquito RT-PCR to all stages of Wb and Bm. |
1066 |
Wb-tph-1.F2 |
GGATGCATTCACAGATGACGAA |
|
W. bancrofti |
|
|
Forward PCR primer Wb specific Tph qPCR primer |
1067 |
Wb-tph-1.R2 |
ATCGCCATCTTCACCTTCCGT |
|
W. bancrofti |
|
|
Reverse PCR primer Wb specific Tph qPCR primer |
1068 |
Bm-tph-1.F2 |
GATGCATTCACAGATGACGAG |
|
B. malayi |
|
|
Forward PCR primer BM specific Tph qPCR primer |
1069 |
Bm-tph-1.R2 |
TCACCATCTTCACCTTCAGC |
|
B. malayi |
|
|
Reverse PCR primer BM specific Tph qPCR primer |
1087 |
S2 |
GTTAAGCAACGTTGGGCCTGG |
Diagnostic |
parasite |
|
|
Forward primer to amplify parasite 5s for identification. Used as outer primers for nested PCR with Ms86U/Ms265L |
1088 |
S16 |
TTGACAGATCGGACGAGATG |
Diagnostic |
parasite |
|
|
Reverse primer to parasite 5s rDNA for species identification. Used as outer primers for nested PCR with Ms86U/Ms265L |
1095 |
Bm-alt-2.QF |
AGCTTGCTACGATCAACGTGAA |
Diagnostic |
B. malayi |
|
|
Forward primer for QRT-PCR of Bm-alt-2 gene |
1096 |
Bm-alt-2.QR |
TCTGTCAGTCCATGCCTGATTC |
Diagnostic |
B. malayi |
|
|
Reverse primer for QRT-PCR of Bm-alt-2 gene |
1125 |
1125Bm-ndk.qrt-pcr.F |
CCTCTAAATTCAATGCCAGGTACTAT |
Diagnostic |
B. malayi |
|
|
Forward PCR primer for B. malayi NDK qRT-PCR primer |
1126 |
1126Bm-ndk.qrt-pcr.R |
CACTCACAGAGTTCTTCTGGTTTAAA |
Diagnostic |
B. malayi |
|
|
Reverse PCR primer for B. malayi NDK qRT-PCR primer |
1425 |
Wb-LDRFamprobe |
ATCTGCCCATAGAAATAACTACGGTGGATCTCTG |
Diagnostic |
W. bancrofti |
|
|
Probe for real-time PCR Wb LDR repeat diagnostic assay |
1426 |
LDR1 |
ATTTTGATCATCTGGGAACGTTAATA |
Diagnostic |
W. bancrofti |
|
|
Forward primer for real-time PCR Wb LDR repeat diagnostic assay |
1427 |
LDR2 |
CGACTGTCTAATCCATTCAGAGTGA |
Diagnostic |
W. bancrofti |
|
|
Reverse primer for real-time PCR Wb LDR repeat diagnostic assay |
1428 |
Bm-HhaI.qF1 |
GTGCCAAAACTACTAAAAAAAGCTTATTT |
Diagnostic |
B. malayi |
|
|
Forward primer for real-time PCR on Bm DNA- amplifies HhaI |
1429 |
Bm-HhaI.qR1 |
CAATGCAGCTAACGTAGTCAATTAATT |
Diagnostic |
B. malayi |
|
|
Reverse primer for designed for real-time PCR on Bm DNA- amplifies HhaI |
1465 |
G18S4-SSU-F |
GCTTGTCTCAAAGATTAAGCC |
|
Filaria |
|
|
Forward primer amplifies filarial SSU with SSU R26 |
1797 |
Bm-clk1.F |
TTCGAAACGGCAACAGGAA |
Diagnostic |
B. malayi |
|
|
Forward primer for Ubiquinone biosynthesis protein |
1798 |
Bm-clk1.R |
GATCCATTTCAGCGCCTCA |
Diagnostic |
B. malayi |
|
|
Reverse primer for Ubiquinone biosynthesis protein |
1824 |
ARCOI-F1 |
AGTGTTGAGGGACAGCCAGAATTG |
Gene exepression |
A. reconditum |
|
|
Forward primer for A. reconditum CoxI primers |
1825 |
ARCOI-R1 |
CCAAAACTGGAACAGACAAAACAAGC |
Gene exepression |
A. reconditum |
|
|
Reverse primer for A. reconditum CoxI primers |
1973 |
Wlb.0220(F) |
ACAATGCTGCACAAGTTTGGAA |
Gene exepression |
W. bancrofti |
|
301 |
Forward qPCR primer for Wolbachia superoxide_dismutase_sodA |
1974 |
Wlb.0220(R) |
AAGTAATAGGCATGCTCCCATACA |
Gene exepression |
W. bancrofti |
|
301 |
Reverse qPCR primer for Wolbachia superoxide_dismutase_sodA |
1977 |
Wlb.0656(F) |
TGAAATTGAAAAACACCCTCCTCTA |
Gene exepression |
W. bancrofti |
|
301 |
Forward qPCR primer Wolbachia Methionyl_tRNA Formyltransferase |
1978 |
Wlb.0656(R) |
ATTCCTTCCCTCCATTTGCA |
Gene exepression |
W. bancrofti |
|
301 |
Reverse qPCR primer Wolbachia Methionyl_tRNA Formyltransferase |
1985 |
Wlb.0674(F) |
ATACTCAAGTCCATGGGCGCT |
Gene exepression |
W. bancrofti |
|
301 |
Forward qPCR primer Wolbachia malic enzyme qPCR |
1986 |
Wlb.0674(R) |
CAATTATTGCGTCTGGCCTCA |
Gene exepression |
W. bancrofti |
|
301 |
Reverse qPCR primer Wolbachia malic enzyme |
2046 |
Wlb.0549-C-(F) |
TTGGGTCAAATGTTGGAGATGA |
Gene exepression study |
W. bancrofti |
|
301 |
Forward qPCR primer Wolbachia predicted acid phospatase |
2047 |
Wlb.0549-C-(R) |
CCGTCCGGATTTTCAGTGAA |
Gene exepression study |
W. bancrofti |
|
301 |
Reverse qPCR primer Wolbachia predicted acid phospatase |
2110 |
Bma.PDFR-1.cDNA.F |
ATGGACAATTTGTCGAAGGTTGC |
|
B. malayi |
|
|
Forward primer amplifies B malayi PDFR-1 |
2111 |
Bma.PDFR-1.cDNA.R |
AATGACTCACTTCATCCTATCCAATTCA |
|
B. malayi |
|
|
Reverse primer amplifies B malayi PDFR-1 |
2122 |
FtsZ-(F)-291 |
TGAAGGTGTGCGCCGTATGC |
Gene exepression study |
W. bancrofti |
|
187 |
Forward qPCR primer Wolbachia cell division protein FtsZ |
2123 |
FtsZ-(R)-477 |
TAAGTCAGTCACCCCTCTAATG |
Gene exepression study |
W. bancrofti |
|
187 |
Reverse qPCR primer Wolbachia cell division protein FtsZ |
2130 |
Wlb.0432(F)-I |
GCTGGAGCTCGCTACTTTGG |
Gene exepression study |
W. bancrofti |
|
|
Forward qPCR primer Wolbachia Surface Protein WSP |
2131 |
Wlb.0432(R)-I |
AAGTTGCGGTGGTTGATTTTG |
Gene exepression study |
W. bancrofti |
|
|
Reverse qPCR primer Wolbachia Surface Protein WSP |
2132 |
Wlb.0654(F)-I |
AAGTTGCGGTGGTTGATTTTG |
Gene exepression study |
W. bancrofti |
|
154 |
Forward qPCR primer Wolbachia carbamoylphosphate sythase small subunit |
2133 |
Wlb.0654(R)-I |
CCTGGACCATTCGAGAGCAC |
Gene exepression study |
W. bancrofti |
|
154 |
Reverse qPCR primer Wolbachia carbamoylphosphate sythase small subunit |
2135 |
Wlb.0114(F)-I |
CAATTGTAGTTGCTCCCGATGA |
Gene exepression study |
W. bancrofti |
|
151 |
Forward qPCR primer Wolbachia N-formylmethional-tRNA deformase |
2136 |
Wlb.0114(R)-I |
AGCACTCCAATTTGCACCG |
Gene exepression study |
W. bancrofti |
|
151 |
Reverse qPCR primer Wolbachia N-formylmethional-tRNA deformase |
2137 |
Wlb.0097(F)-I |
GGGCCAATAAAGAGCTTCGA |
Gene exepression study |
W. bancrofti |
|
151 |
Forward qPCR primer Wolbachia DhnA type fructose 1,6 biphosphate aldolase |
2138 |
Wlb.0097(R)-I |
TGTGTGGAAGCATTCCAGCA |
Gene exepression study |
W. bancrofti |
|
151 |
Reverse qPCR primer Wolbachia DhnA type fructose 1,6 biphosphate aldolase |
2145 |
Wlb.0405(F)-I |
GAGAAATAATTGACGCCTGCG |
Gene exepression study |
W. bancrofti |
|
151 |
Forward qPCR primer Wolbachia DNA gyrase topoisomerase II subunit A |
2146 |
Wlb.0405(R)-I |
CCTCGACCTGTAGCAAACGC |
Gene exepression study |
W. bancrofti |
|
151 |
Reverse qPCR primer Wolbachia DNA gyrase topoisomerase II subunit A |
2171 |
Wbm0061-F |
TGGCACGTTTCGTGAGAATC |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia predicted membrane GTPase |
2172 |
Wbm0061-R |
AGCACGCCATCTACCATGC |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia predicted membrane GTPase |
2177 |
Wbm0582-F |
TCAAGGTTTACCGGATGTTGC |
Gene exepression study |
W. bancrofti |
|
|
Forward qPCR primer Wolbachia Ankyrin repeat contain protein |
2178 |
Wbm0582-R |
TGCCTGATCTTCGCCTTTTCT |
Gene exepression study |
W. bancrofti |
|
|
Reverse qPCR primer Wolbachia Ankyrin repeat contain protein |
2179 |
Wbm0287-F |
CGCTGTTCAAAGAGGATGCTT |
Gene exepression study |
W. bancrofti |
|
103 |
Forward qPCR primer Wolbachia Ankyrin repeat contain protein |
2180 |
Wbm0287-R |
GGCCCTATGCACTGGCTTACT |
Gene exepression study |
W. bancrofti |
|
103 |
Reverse qPCR primer Wolbachia Ankyrin repeat contain protein |
2181 |
Wbm0566-F |
GAGCGGAAAAGATAATGCAAGAC |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia Thioredoxin reductase |
2182 |
Wbm0566-R |
CTGTATTTGGTGCATGCCCA |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia Thioredoxin reductase |
2183 |
Wbm0608-F |
GTGCTGGTAGACTTTTGGGCA |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia Thioredoxin-trx |
2184 |
Wbm0608-R |
GCGTGCAATTTCTTTACCGTC |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia Thioredoxin-trx |
2185 |
Wbm0494-F |
AATTGATGTTGATATTATCGATGAGTCC |
Gene exepression study |
W. bancrofti |
|
209 |
Forward qPCR primer Wolbachia stress induced morphogen BoIA |
2186 |
Wbm0494-R |
TTTGTGTATATAAGTGAAGAGAAATTGCAT |
Gene exepression study |
W. bancrofti |
|
209 |
Reverse qPCR primer Wolbachia stress induced morphogen BoIA |
2189 |
Wbm0435-F |
TAAGGAAAAAAAGCTGAGCTGCA |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia glutathione-s-transferase |
2190 |
Wbm0435-R |
ATAACAGTAGACGAGTCAAGCAATTTG |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia glutathione-s-transferase |
2191 |
Wbm0296-F |
GGTCTGAAGAGAGGATGAAGCG |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia Ankyrin repeat contain protein |
2192 |
Wbm0296-R |
TTTTATCCGCAGCACAAGACAC |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia Ankyrin repeat contain protein |
2193 |
Wbm0556-F |
AGCCATTGTACAGCTATGGAGGA |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia glutathione-sythase |
2194 |
Wbm0556-R |
TGACCCTTGGAACTCGTTTCAT |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia glutathione-sythase |
2195 |
Wbm0415-F |
GCAAAGGAGCTGCTAGATGAGAA |
Gene exepression study |
W. bancrofti |
|
205 |
Forward qPCR primer Wolbachia glutaredoxin |
2196 |
Wbm0415-R |
CATCTAACTTCCCTTCCCTTTCAAG |
Gene exepression study |
W. bancrofti |
|
205 |
Reverse qPCR primer Wolbachia glutaredoxin |
2197 |
Wbm0127-F |
GTGCCACGCTAGCTTCAAGG |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia Peroxiredoxin |
2198 |
Wbm0127-R |
CCACTAACTTTTACGTTCTCCCAGAT |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia Peroxiredoxin |
2199 |
Wbm0569-F |
GGCAAAAACATGCTCGTAATCA |
Gene exepression study |
W. bancrofti |
|
201 |
Forward qPCR primer Wolbachia ferredoxin |
2200 |
Wbm0569-R |
ATTTGGCCACTTTTGCGAGT |
Gene exepression study |
W. bancrofti |
|
201 |
Reverse qPCR primer Wolbachia ferredoxin |
2201 |
Wbm0145-F |
CCTTGCACAATTTAACTACAGGCA |
Gene exepression study |
W. bancrofti |
|
101 |
Forward qPCR primer Wolbachia surF1-family protein with 2225 R |
2216 |
Wlb.0707(F)-I |
CCAGAAGCTAATGGAAATGATATTTTT |
Gene exepression study |
W. bancrofti |
|
101 |
Forward qPCR primer Wolbachia cold shock protein with 2222 |
2222 |
Wlb.0707(R)-I |
ATTCCCTTTTCCTTGTTTTCTCCT |
Gene exepression study |
W. bancrofti |
|
101 |
Reverse qPCR primer Wolbachia cold shock protein with 2216 |
2225 |
Wlb.0145(R)-I |
GAGACAGTGCATGATAGCCGC |
Gene exepression study |
W. bancrofti |
|
101 |
Reverse qPCR primer Wolbachia surF1-family protein with 2201 F |
2228 |
Wlb.0685(F)-I |
GGTGCAGGACCTGTTGGAAT |
Gene exepression study |
W. bancrofti |
|
102 |
Forward qPCR primer Wolbachia thioredoxin-reductase |
2229 |
Wlb.0685(R)-I |
AGTGCATTGTCCTCCCGCT |
Gene exepression study |
W. bancrofti |
|
102 |
Reverse qPCR primer Wolbachia thioredoxin-reductase |
2232 |
Wlb.0507(F)-II |
GTGCATGCGAAGGCTCTCTT |
Gene exepression study |
W. bancrofti |
|
151 |
Forward qPCR primer Wolbachia ferrdoxin |
2233 |
Wlb.0507(R)-II |
CCAAGCCTTGACGTCTCTGTT |
Gene exepression study |
W. bancrofti |
|
151 |
Reverse qPCR primer Wolbachia ferrdoxin |
2459 |
High Mobility Protei F |
CAAGCGGAGCATCAACATCA |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B malayi High Motility Protien primers |
2460 |
High Mobility Protei R |
CGGTGCATTCGGATCTTTG |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protien primers |
2461 |
High Mobility Protei F1 |
GACGAAGAAAGTCAAAGATCCGAAT |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi High Motility Protein |
2462 |
High Mobility Protei R1 |
CGAGATATATTATCCAGCAACCAGAA |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protein |
2463 |
High Mobility Protei F2 |
ACGAAGAAAGTCAAAGATCCGAAT |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi High Motility Protein |
2464 |
High Mobility Protei R2 |
CGAGATATATTATCCAGCAACCAGAA |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protein |
2465 |
High Mobility Protei F3 |
ACCATCATGGCTAAGACAGGGCCA |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi High Motility Protein |
2466 |
High Mobility Protei R3 |
ACTTGGCTCGCTTCGGTGCA |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protein |
2467 |
High Mobility Protei F4 |
CCATCATGGCTAAGACAGGGCCA |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi High Motility Protein |
2468 |
High Mobility Protei R4 |
GCTCGCTTCGGTGCATTCGG |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protein |
2469 |
High Mobility Protei F5 |
AGGTCAAGCGGAGCATCAACATCA |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi High Motility Protein |
2470 |
High Mobility Protei R5 |
ACTTGGCTCGCTTCGGTGCAT |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi High Motility Protein |
2471 |
Major Sperm Protien2 F |
CGTGTGACACATTCGATGCA |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi Major Sperm Protein2 primers |
2472 |
Major Sperm Protien2 R |
CATTCGGATGGTAATACGATCGT |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi Major Sperm Protein2 primers |
2473 |
Major Sperm Protien2 F1 |
CCACCGGGTGATATCCATACC |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi Major Sperm Protein2 |
2475 |
Major Sperm Protien2 R1 |
CGACCACCGGCATTAGTAATCTTAAT |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. Malayi Major Sperm Protein2 use with 2473 |
2476 |
Major Sperm Protien2 F3 |
GCAGTCGGTTCCACCGGGTG |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi Major Sperm Protein2 |
2477 |
Major Sperm Protien2 R2 |
CAATGCGACGACCACCGGCA |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi Major Sperm Protein2 use with 2473 |
2478 |
Major Sperm Protien2 F4 |
CGCAGTCGGTTCCACCGGG |
Gene exepression study |
B. malayi |
|
|
Forward qPCR primer amplifies B. malayi Major Sperm Protein2 |
2479 |
Major Sperm Protien2 R3 |
CCAATGCGACGACCACCGGC |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi Major Sperm Protein2 |
2481 |
Major Sperm Protien2 R4 |
ACCAATGCGACGACCACCGG |
Gene exepression study |
B. malayi |
|
|
Reverse qPCR primer amplifies B. malayi Major Sperm Protein2 |
2482 |
Actin 2B F |
CTCCCGAGGAACATCCAGTACT |
|
|
|
|
Forward qPCR primer contol primers |
2483 |
Actin 2B R |
CTCTGTTTGCCTTTGGGTTCA |
|
|
|
|
Reverse qPCR primer contol primers |
2484 |
NADH SubI F |
GGGTGGCACTCAGTGTCGTA |
|
|
|
|
Forward qPCR primer contol primers |
2485 |
NADH SubI R |
ACAACGCCTGAAAAATACCAGAGTA |
|
|
|
|
Reverse qPCR primer contol primers |
2486 |
Histone 3 F |
GCTAACGAAAGCACCATCAAGA |
|
|
|
|
Forward qPCR primer contol primers |
2487 |
Histone 3 R |
TCTTGCAAAGCACGCATACC |
|
|
|
|
Reverse qPCR primer contol primers |
2490 |
D.imm-F1 |
CATCAGGTGATGATGTGATGAT |
|
D. immitis |
|
|
Forward primer amplifies D. immitis ITS2 |
2491 |
D.imm-R1 |
TTGATTGGATTTTAACGTATCATTT |
|
D. immitis |
|
|
Reverse primer amplifies D. immitis ITS2 |
2492 |
DIDR-F1 |
AGTGCGAATTGCAGACGCATTGAG |
|
Filaria |
|
|
Forward primer amplifies filarial ITS2 |
2493 |
DIDR-R1 |
AGCGGGTAATCACGACTGAGTTGA |
|
Filaria |
|
|
Reverse primer amplifies filarial ITS2 |
2576 |
Bm1_juvp120_F |
GCCTTTTTCACATTAACTCAGACA |
|
B. malayi |
|
|
Forward primer amplifies B malayi Juvp-120 |
2577 |
Bm1_juvp120_R |
GCTGCTGAATAAGTGGTTGTTG |
|
B. malayi |
|
|
Reverse primer amplifies B malayi Juvp-120 |
2611 |
Mos ITS2 F |
TGT GAA CTG CAG GAC ACA TGA A |
|
Mosquito |
|
|
Forward primer amplifies mosquito ITS2 |
2612 |
Mos ITS2 R |
ATG CTT AAA TTT AGG GGG TAG TC |
|
Mosquito |
|
|
Reverse primer amplifies mosquito ITS2 |
2643 |
SSU R26 |
CATTCTTGGCAAATGCTTTCG |
|
Filaria |
|
|
Reverse primer amplifies filarial SSU with G18S4-SSU-F |
2656 |
COI filaF |
TDTCTWTRDTDATTCGTT |
|
Filaria |
|
|
Forward degenerate primers for filarial CoxI |
2657 |
COI filR |
ACDACATAATAAGTATCATG |
|
Filaria |
|
|
Reverse degenerate primers for filarial CoxI |
2658 |
Fila12s F |
CGGGAGTAAAGTTTTGTTTAAACCG |
|
Filaria |
|
|
Forward primer amplifies filarial 12s |
2659 |
Fila12s R |
CATTGACGGATGGTTTGTACCAC |
|
Filaria |
|
|
Reverse primer amplifies filarial 12s |
2660 |
NC1- ITS2 F |
ACGTCTGGTTCAGGGTTGTT |
|
Filaria |
|
|
Forward primer for filarial ITS2- designed for C.elegans |
2661 |
NC2- ITS2 R |
TTAGTTTCTTTTCCTCCGCT |
|
Filaria |
|
|
Reverse primer for filarial ITS2- designed for C.elegans |
2662 |
ITS- A F |
GGAAGGAGAAGTCGTAACAAGG |
|
|
|
|
Forward primer for ITS |
2663 |
ITS- B R |
CTTTTCCTCCGCTTATTGATATG |
|
|
|
|
Reverse primer for ITS |
2664 |
ITS- C R |
GCAATTCACACCAAGTATCGC |
|
|
|
|
Reverse primer for ITS |
2665 |
ITS- D F |
CTCTCGGCAACGGATATCTCG |
|
|
|
|
Forward primer for ITS |
2666 |
ITS- E |
CGGCAACGGATATCTCGGCTC |
|
|
|
|
ITS primer |
2667 |
ITS1 |
TCCGTAGGTGAACCTGCGG |
|
|
|
|
ITS primer |
2668 |
ITS2 |
GCTGCGTTCTTCATCGATGC |
|
|
|
|
ITS primer |
2669 |
16sOvC F |
AGCCTTAGCGTGATGGCATA |
|
O.volvulus |
|
|
Forward primer for Ov SSU |
2792 |
WSP F1 |
GTCCAATARSTGATGARGAAAC |
|
|
|
|
Forward primer for WSP |
2793 |
WSP R1 |
CYGCACCAAYAGYRCTRTAAA |
|
|
|
|
Reverse primer for WSP |
2802 |
16S UF |
CCAGTGGCGAAGGCGTCTAT |
|
Bacteria (universal) |
|
|
Forward primer for Universal bacterial 16S primer |
2803 |
16S UR |
CCCCGTCAATTCCTTTGAGTTT |
|
Bacteria (universal) |
|
|
Reverse primer for Universal bacterial 16S primer |
2810 |
16S Wolb F |
GAAGATAATGACGGTACTCAC |
|
W. bancrofti |
|
|
Forward primer for 16S Wolbachia primer |
2811 |
16S Wolb R |
GTCACTGATCCCACTTTAAATAAC |
|
W. bancrofti |
|
|
Reverse primer for 16S Wolbachia primer |
2812 |
FtsZUNI-F |
GGYAARGGTGCRGCAGAAGA |
|
W. bancrofti |
|
|
Forward primer for FtsZ Wolbachia primer |
2813 |
FtsZUNI-R |
ATCRATRCCAGTTGCAAG |
|
W. bancrofti |
|
|
Reverse primer for FtsZ Wolbachia primer |
2814 |
WSPintF |
TAGYTACTACATTCGCTTGCA |
|
W. bancrofti |
|
|
Forward primer for WSP Wolbachia primer |
2815 |
WSPintR |
CCAAYAGTGCYATAAAGAAC |
|
W. bancrofti |
|
|
Reverse primer for WSP Wolbachia primer |
2878 |
Lin42 cds forward |
AAC GTG GCA CCA TCA GC |
|
C. elegans |
|
|
Forward primer for C.elegans Lin-42 complete coding sequence |
2879 |
Lin42 cds reverse |
CGC AAT CTC GAG ATA CTG TAG TAG A |
|
C. elegans |
|
|
Reverse primer for C.elegans Lin-42 complete coding sequence |
2884 |
ITS2 Forward |
TGTGAACTGCAGGACACATGAA |
|
Mosquito |
|
|
Forward primer for Anopheles ITS |
2885 |
ITS2 Reverse |
ATGCTTAAATTTAGGGGGTAGTC |
|
Mosquito |
|
|
Reverse primer for Anopheles ITS |
3056 |
LCO1490 |
ggtcaacaaatcataaagatattgg |
|
Mosquito |
|
|
Mosquito Barcoding primers |
3057 |
HC02198 |
taaacttcagggtgaccaaaaaatca |
|
Mosquito |
|
|
Mosquito Barcoding primers |
3058 |
BmGAPDH F |
ATGAGCAAACCAAAGGTTGGA |
|
B. malayi |
|
|
Forward primer for Bm GAPDH gene |
3059 |
BmGAPDH R |
TTATCTGCTGGCAATGTACG |
|
B. malayi |
|
|
Reverse primer for Bm GAPDH gene |
2670A |
16sOvB R |
ACCCACATTGCATTCCTTTC |
|
O.volvulus |
|
|
Reverse primer for Ov SSU |